diff --git a/Doc/doxygen/DoxyfileBootCommander.bat b/Doc/doxygen/DoxyfileBootCommander.bat
index c08bd8b1..af08b644 100644
--- a/Doc/doxygen/DoxyfileBootCommander.bat
+++ b/Doc/doxygen/DoxyfileBootCommander.bat
@@ -3,9 +3,8 @@
 :: - DoxyGen (doxygen.exe)
 :: - Graphviz (dot.exe)
 :: - MikTex (pdflatex.exe)
-if exist ..\RM_BootCommander.pdf del ..\RM_BootCommander.pdf
-if exist ..\RM_BootCommander.chm del ..\RM_BootCommander.chm
+if exist ..\ReferenceManuals\RM_BootCommander.pdf del ..\ReferenceManuals\RM_BootCommander.pdf
 doxygen.exe DoxyfileBootCommander
 call .\output\BootCommander\latex\make.bat
-call copy .\output\BootCommander\latex\refman.pdf ..\RM_BootCommander.pdf
+call copy .\output\BootCommander\latex\refman.pdf ..\ReferenceManuals\RM_BootCommander.pdf
 
diff --git a/Doc/doxygen/DoxyfileBootCommander.sh b/Doc/doxygen/DoxyfileBootCommander.sh
index 635c1f9f..97de4158 100755
--- a/Doc/doxygen/DoxyfileBootCommander.sh
+++ b/Doc/doxygen/DoxyfileBootCommander.sh
@@ -11,9 +11,9 @@
 #                                           texlive-latex-extra
 # On openSUSE based systems: sudo zypper install make doxygen graphviz texlive-latex 
 #                                        texlive-tabu texlive-tocloft
-rm -rf ../RM_BootCommander.pdf
+rm -rf ../ReferenceManuals/RM_BootCommander.pdf
 doxygen DoxyfileBootCommander
 cd output/BootCommander/latex/
 make
-cp refman.pdf ../../../../RM_BootCommander.pdf
+cp refman.pdf ../../../../ReferenceManuals/RM_BootCommander.pdf
 cd ../../../
diff --git a/Doc/doxygen/DoxyfileLibOpenBLT.bat b/Doc/doxygen/DoxyfileLibOpenBLT.bat
index 2ff0f100..f855e103 100644
--- a/Doc/doxygen/DoxyfileLibOpenBLT.bat
+++ b/Doc/doxygen/DoxyfileLibOpenBLT.bat
@@ -3,9 +3,8 @@
 :: - DoxyGen (doxygen.exe)
 :: - Graphviz (dot.exe)
 :: - MikTex (pdflatex.exe)
-if exist ..\RM_LibOpenBLT.pdf del ..\RM_LibOpenBLT.pdf
-if exist ..\RM_LibOpenBLT.chm del ..\RM_LibOpenBLT.chm
+if exist ..\ReferenceManuals\RM_LibOpenBLT.pdf del ..\ReferenceManuals\RM_LibOpenBLT.pdf
 doxygen.exe DoxyfileLibOpenBLT
 call .\output\LibOpenBLT\latex\make.bat
-call copy .\output\LibOpenBLT\latex\refman.pdf ..\RM_LibOpenBLT.pdf
+call copy .\output\LibOpenBLT\latex\refman.pdf ..\ReferenceManuals\RM_LibOpenBLT.pdf
 
diff --git a/Doc/doxygen/DoxyfileLibOpenBLT.sh b/Doc/doxygen/DoxyfileLibOpenBLT.sh
index fb6561e4..4d4d1ba3 100755
--- a/Doc/doxygen/DoxyfileLibOpenBLT.sh
+++ b/Doc/doxygen/DoxyfileLibOpenBLT.sh
@@ -11,9 +11,9 @@
 #                                           texlive-latex-extra
 # On openSUSE based systems: sudo zypper install make doxygen graphviz texlive-latex 
 #                                        texlive-tabu texlive-tocloft
-rm -rf ../RM_LibOpenBLT.pdf
+rm -rf ../ReferenceManuals/RM_LibOpenBLT.pdf
 doxygen DoxyfileLibOpenBLT
 cd output/LibOpenBLT/latex/
 make
-cp refman.pdf ../../../../RM_LibOpenBLT.pdf
+cp refman.pdf ../../../../ReferenceManuals/RM_LibOpenBLT.pdf
 cd ../../../
diff --git a/Doc/doxygen/DoxyfileOpenBLT.bat b/Doc/doxygen/DoxyfileOpenBLT.bat
index 139cb598..ac4e884e 100644
--- a/Doc/doxygen/DoxyfileOpenBLT.bat
+++ b/Doc/doxygen/DoxyfileOpenBLT.bat
@@ -3,9 +3,8 @@
 :: - DoxyGen (doxygen.exe)
 :: - Graphviz (dot.exe)
 :: - MikTex (pdflatex.exe)
-if exist ..\RM_OpenBLT.pdf del ..\RM_OpenBLT.pdf
-if exist ..\RM_OpenBLT.chm del ..\RM_OpenBLT.chm
+if exist ..\ReferenceManuals\RM_OpenBLT.pdf del ..\ReferenceManuals\RM_OpenBLT.pdf
 doxygen.exe DoxyfileOpenBLT
 call .\output\OpenBLT\latex\make.bat
-call copy .\output\OpenBLT\latex\refman.pdf ..\RM_OpenBLT.pdf
+call copy .\output\OpenBLT\latex\refman.pdf ..\ReferenceManuals\RM_OpenBLT.pdf
 
diff --git a/Doc/doxygen/DoxyfileOpenBLT.sh b/Doc/doxygen/DoxyfileOpenBLT.sh
index fd652947..433053f9 100755
--- a/Doc/doxygen/DoxyfileOpenBLT.sh
+++ b/Doc/doxygen/DoxyfileOpenBLT.sh
@@ -11,9 +11,9 @@
 #                                           texlive-latex-extra
 # On openSUSE based systems: sudo zypper install make doxygen graphviz texlive-latex 
 #                                        texlive-tabu texlive-tocloft
-rm -rf ../RM_OpenBLT.pdf
+rm -rf ../ReferenceManuals/RM_OpenBLT.pdf
 doxygen DoxyfileOpenBLT
 cd output/OpenBLT/latex/
 make
-cp refman.pdf ../../../../RM_OpenBLT.pdf
+cp refman.pdf ../../../../ReferenceManuals/RM_OpenBLT.pdf
 cd ../../../
diff --git a/Doc/doxygen/DoxyfileSeedNKey.bat b/Doc/doxygen/DoxyfileSeedNKey.bat
index 9888c5ec..803222f9 100644
--- a/Doc/doxygen/DoxyfileSeedNKey.bat
+++ b/Doc/doxygen/DoxyfileSeedNKey.bat
@@ -3,9 +3,8 @@
 :: - DoxyGen (doxygen.exe)
 :: - Graphviz (dot.exe)
 :: - MikTex (pdflatex.exe)
-if exist ..\RM_SeedNKey.pdf del ..\RM_SeedNKey.pdf
-if exist ..\RM_SeedNKey.chm del ..\RM_SeedNKey.chm
+if exist ..\ReferenceManuals\RM_SeedNKey.pdf del ..\ReferenceManuals\RM_SeedNKey.pdf
 doxygen.exe DoxyfileSeedNKey
 call .\output\SeedNKey\latex\make.bat
-call copy .\output\SeedNKey\latex\refman.pdf ..\RM_SeedNKey.pdf
+call copy .\output\SeedNKey\latex\refman.pdf ..\ReferenceManuals\RM_SeedNKey.pdf
 
diff --git a/Doc/doxygen/DoxyfileSeedNKey.sh b/Doc/doxygen/DoxyfileSeedNKey.sh
index 7c2e8009..d38e288e 100755
--- a/Doc/doxygen/DoxyfileSeedNKey.sh
+++ b/Doc/doxygen/DoxyfileSeedNKey.sh
@@ -11,9 +11,9 @@
 #                                           texlive-latex-extra
 # On openSUSE based systems: sudo zypper install make doxygen graphviz texlive-latex 
 #                                        texlive-tabu texlive-tocloft
-rm -rf ../RM_SeedNKey.pdf
+rm -rf ../ReferenceManuals/RM_SeedNKey.pdf
 doxygen DoxyfileSeedNKey
 cd output/SeedNKey/latex/
 make
-cp refman.pdf ../../../../RM_SeedNKey.pdf
+cp refman.pdf ../../../../ReferenceManuals/RM_SeedNKey.pdf
 cd ../../../